CDS

Accession Number TCMCG017C01552
gbkey CDS
Protein Id OMP12820.1
Location join(3494..3575,3689..3810,4398..4461,4815..4883,5315..5433,6139..6205,6356..6447,6655..6792,6869..6973,7523..7606,7997..8140)
GeneID InterPro:IPR000445
Organism Corchorus olitorius
locus_tag COLO4_02723

Protein

Length 361aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01006026.1
Definition hypothetical protein COLO4_02723 [Corchorus olitorius]
Locus_tag COLO4_02723

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCAAAAACAGGATTCACTTTCAAACCCCTTTCCTCGTCTGCATCAGCAACTCAAGTTCCGTCTTCCGACCAAAACCCAGGTTCTGAAGTAACCAACAATGTTTCTATCCCAAAAGTTCGGGTTTTTACGAGGAAAAAGAGAGTTAGAAAGACCGTGGATGTTGTTAAAGAGAATCCTACTGCAGAAAATAAGGAACATAGTGGGCGCAGCCTACCTGACATTGAGGAATTTGCATACAAGAAAGTAGATCGACCTGCTCTGTCAGGGAAGTCAAAGTCCACATTCGGCAAGCTTAATATGGGAACTGATATTGCTTCCTCAGTTGCAATGGAAGGCAAAGCACCTGCCAATTGGGAAAAAGTGCTCGAAGGAATCCGTAAAATGAGGTCTTCTGAAGATGCACCTGTAGACACTATGGGATGTGAGAAAGCCGGCAGTGTTCTTCCTCCTAAGGAAAGGAGGTTTGCTGTTTTGATATCCTCACTATTATCGAGCCAAACCAAAGATCACGTTACTCATGGAGCAATTGAACGTCTCACACAGAATCATCTTCTCACTCCTGATGCCATGGACAAAGCTGATGAAGCAACTCTTAAGGACTTGATCTACCCGGTTGGGTTCTACACAAGGAAAGCTACGAATATGAAGAAAATTGCGAAACTCTGTCTCATGAAGTATGATGGGGACATACCAAGCTCGTTGGAGGAATTACTCTTACTTCCAGGCATAGGCCCAAAGATGGCTCATTTGGTTATGAATATTGCATGGAATGATGTTCAAGGGATATGTGTAGATACTCATGTACACCGCATTTCAAATAGGCTTGGATGGGTGTCTCGACCAGGCACAAAGCAGAAAACTTTGTATCCTGAGGAAACAAGAGTGGCATTGCAACAGTGGCTTCCAAAGGAGGAATGGGTCCCAATTAATCCTCTTCTGGTGGGATTTGGACAGACAATTTGTACTCCACTTAGGCCACGGTGTGACATCTGCAGCATCACTGAGTTCTGCCCATCTGCATTTAGGGAAACCTCAAGCCCGTCTTCCAAGGTAAAGAAATCTGGTGCTAGAAAAAAGCTTTGA
Protein:  
MPKTGFTFKPLSSSASATQVPSSDQNPGSEVTNNVSIPKVRVFTRKKRVRKTVDVVKENPTAENKEHSGRSLPDIEEFAYKKVDRPALSGKSKSTFGKLNMGTDIASSVAMEGKAPANWEKVLEGIRKMRSSEDAPVDTMGCEKAGSVLPPKERRFAVLISSLLSSQTKDHVTHGAIERLTQNHLLTPDAMDKADEATLKDLIYPVGFYTRKATNMKKIAKLCLMKYDGDIPSSLEELLLLPGIGPKMAHLVMNIAWNDVQGICVDTHVHRISNRLGWVSRPGTKQKTLYPEETRVALQQWLPKEEWVPINPLLVGFGQTICTPLRPRCDICSITEFCPSAFRETSSPSSKVKKSGARKKL